You may use 'sample' function in R, and it is sufficient usually.
The following is one of my favoriate code. Here it is expressed in R language.
# R coding showing the principle of random permutation
RanPermute <- function(n)
{
x <- cbind(1:n, runif(n))
return(x[order(x[,2]),1])
}
# Test code
RanPermute(100)
2010-04-30
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